PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 333aa    MW: 36983.3 Da    PI: 6.4447
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032003.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
      Pbr032003.1 14 RGLWSPEEDEKLINCITTYGHGCWSSVPKLAGLQRCGKSCRLRWTNYL 61
                     788*******************************************97 PP

2Myb_DNA-binding46.21.1e-1467109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++ +E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
      Pbr032003.1  67 RGSFSHQEAALIIELHSILGNK-WAQIAKHLP-GRTDNEVKNFWN 109
                      899*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-26664IPR009057Homeodomain-like
PROSITE profilePS5129418.16961IPR017930Myb domain
SuperFamilySSF466895.24E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001674.06E-121761No hitNo description
PROSITE profilePS5129424.6662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2465116IPR009057Homeodomain-like
SMARTSM007172.9E-1466114IPR001005SANT/Myb domain
PfamPF002491.6E-1367110IPR001005SANT/Myb domain
CDDcd001673.24E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINCIT TYGHGCWSSV PKLAGLQRCG KSCRLRWTNY  60
LRPDLKRGSF SHQEAALIIE LHSILGNKWA QIAKHLPGRT DNEVKNFWNS SIKKKLIPHE  120
VNPAFASFSS DHIHNSRGHG SEEGFFTLNT NPNLGSQPQD QLYLPIVPPM PSLGLDDHGD  180
FNNILKLDQI SYASNFVDHF LPPFQLPSNN SSSCESSSWS LGYQPHYQYD PNVQQVQNFS  240
INEAAAAQYN NGGNELMVPI SMASSAPAAY ENPSNIPTMP EFCEIIDRNA CGMPILYPSD  300
AQELDSLAKL SCFTSGHGSH PQDLQFPSNQ LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31141167108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4765813e-43AM476581.2 Vitis vinifera contig VV78X241396.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355526.10.0PREDICTED: myb-related protein B-like
TrEMBLM5WVT11e-168M5WVT1_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s20370.11e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.26e-77myb domain protein 26